Showing posts with label Reaction Center. Show all posts
Showing posts with label Reaction Center. Show all posts

PS_1.2.1 Mathematical Expression of Dihedral Angle:

The dihedral angle ($\phi$) is the angle between two planes.
First of all, we should know the General equation of Plane:
$\mathbf{Ax + By + Cz + D = 0}$ .......... (i)
Where $A, B, C, D$ are constants.
And, Equation of plane passing through points $(x_1, y_1, z_1), (x_2, y_2, z_2), (x_3, y_3, z_3)$ is,
$\begin{vmatrix}
x-x_1 & y-y_1  & z-z_1\\
x_2-x_1 & y_2-y_1 & z_2-z_1\\
x_3-x_1 & y_3-y_1 & z_3-z_1
\end{vmatrix}=0$ .......... (ii)
Or,

$\begin{vmatrix}
y_2-y_1 & z_2-z_1\\
y_3-y_1 & z_3-z_1
\end{vmatrix} (x-x_1) + \begin{vmatrix}
z_2-z_1 & x_2-x_1\\
z_3-z_1 & x_3-x_1
\end{vmatrix} (y-y_1) + \begin{vmatrix}
x_2-x_1 & y_2-y_1\\
x_3-x_1 & y_3-y_1
\end{vmatrix} (z-z_1) = 0$ 
.......... (iii)
After Solving $eq^n (iii)$, we get; 

$\left.\begin{matrix}
\left \{ (y_2-y_1)(z_3-z_1) - (z_2-z_1)(y_3-y_1)\right \}x\;+\\
\left \{ (x_3-x_1)(z_2-z_1) - (x_2-x_1)(z_3-z_1)\right \}y\;+ \\
\left \{ (x_2-x_1)(y_3-y_1) - (x_3-x_1)(y_2-y_1)\right \}z + D = 0 \;\;\;\;\;\;\;\;\;\;\;
\end{matrix}\right\}$ .......... (iv)

Where $D$ is Constant term. This $eq^n (iv)$ gives the equation of plane passing through points.
Now,
From the above references, we have to calculate the Dihedral angle between the two planes:

$a_1x + b_1y + c_1z + d_1 = 0$ ..........  (v)
$a_2x + b_2y + c_2z + d_2 = 0$ ..........   (vi)
Which have normal vectors $n_1 = (a_1, b_1, c_1)$ and $n_2 = (a_2, b_2, c_2)$ is simply given dihedral angle through the dot product of the normals.
i.e. $Cos\phi = \hat{n_1}.\hat{n_2}$   ..........  (vii)
Or, 
$Cos\phi = \frac{a_1a_2 + b_1b_2 + c_1c_2}{\sqrt{a_1^2 + b_1^2 + c_1^2}\sqrt{a_2^2 + b_2^2 + c_2^2}}$  ..........  (viii)

Note: Unit Vector - If A is a vector with magnitude A $\neq 0$), then $\hat{n} = \frac{\vec{A}}{\left | A \right |}$ is a unit vector having the same direction as $\vec{A}$.
Click here for: Basic concept on Dihederal angle.

PS_2.3.1 Photosynthesis Reaction Center - Nobel Prize:


The Nobel Prize in Chemistry 1988 was awarded jointly to Johann Deisenhofer, Robert Huber and Hartmut Michel - "for the determination of the three - dimensional structure of a photosynthetic reaction centre". 
The Nobel Prize in Chemistry 1988[1]
Photosynthesis - the most important chemical reaction on earth. In the green leaves of plants solar light is converted to chemical energy, which is used as nutrition not only by the green plants themselves but also for example: by cows who eat green grass, by ourselves who eat the meat of the cow and drink its milk, and so on through the nutritional chain.
Further more, Here have to click a Press Release which held on Nobel Academy, 19 October 1988.

Here is the Nobel Lecture held on December 8, 1988:
By JOHANN DEISENHOFER* and HARTMUT MCHEL**: The Photosynthetic Reaction Center from the Purple Bacterium Rhodopseudomonas Viridis (pdf).
By ROBERT HUBER*: A Structural basis of light energy and Electron Transfer in Biology (pdf).